# Release notes

**v2.1.1 (March, 9th, 2020)**

* **Recommended release.**
* **Required:** facets-suite v2.0.4 or higher
* **Required:** facets\_qc v1.0 or higher
* parameterized mount names. no longer hard referencing `juno`
* gracefully handing errors when user does not have write permissions to repo.
* allowing refits when `dipLogR` is not provided. 
* (implemented functionality to validate .json config file against a schema. But disabled it due to issues with `jsonvalidate` on `juno`. Will be added back in next version)

**v2.1.0 (March, 3rd, 2020)**

* **Major release.** 
* **Required:** facets-suite v2.0.4 or higher. 
* **Required:** facets\_qc v1.0 or higher (that is already part of facets-preview package).
* Introducing "repositories" (or "repo") that can be loaded into `facets-preview`. Quite simply, a "repo" is a folder with all facets runs/fits that be queried and loaded into the app through a "sample manifest" file.
* QC script is now independent of the app and is versioned separately. Multiple versions of QC calls can now co-exist
* Added new QC filters (therefore, require facets-suite v2.0.4 or higher)
* Parameterized `facets-preview` to load options from a confg file (.json). Can be configured to load repositories, set QC scripts, specific version of facets-suite and also the *refit watcher*. 
* Allowing more expansive options for "refit".

**v2.0.0a (December 2019)**

* Integration with IMPACT facets repository maintained by CCS.
* QC criteria evaluating each fit
* Migration to `juno`.
  * Now requires `/juno` to be mounted.
  * All refits now performed on `juno`
* Enhanced features for detailed annotation of fits to enable downstream analyses (*see screenshots below*)
  * Choose fit at `purity` or `hisens` level. Useful when determining cancer cell fractions (CCFs)
  * Enable adjusting `tcn` or `lcn` for some segments. Especially useful to set `lcn` for segments where there are not enough het-snps to estimate allele-specific copy number.
  * Manually set purity estimate (where determinable) for fits with `purity=NA/0.3`
* Allow refits to run both `purity` and `hisens` runs for a new `dipLogR`.
* Forces refit to use the same facets version used as the default fit.

**v1.0.0 (October 2017)**

* initial release (see `version1.0.0` branch)